Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs35734276 chr12:121617386 T/C 2.06E-5 117 48 46.27 24.87 KM Plot
THYM rs35745827 chr1:22109796 C/T 1.81E-13 117 42.25 42.88 6 KM Plot
THYM rs35754151 chr6:163074867 A/G 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs35769711 chr8:50120274 G/T 4.82E-10 117 46.6 49.4 25.83 KM Plot
THYM rs35812502 chr21:44076129 G/A 0.000103 117 41.22 41.05 28.43 KM Plot
THYM rs35820211 chr6:163046252 C/T 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs35843825 chr11:16483508 C/T 8.69E-9 119 40.67 52.22 7.15 KM Plot
THYM rs35849389 chr3:53005235 A/G 0.000238 118 44.38 23.75 25.63 KM Plot
THYM rs35869706 chr2:30759872 G/GA 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs360084 chr1:226054656 G/A 4.09E-6 118 25.83 44.02 40.67 KM Plot
THYM rs36010010 chr3:9836839 G/A 0.000112 116 36.03 50.57 33.25 KM Plot
THYM rs36030535 chr11:16503499 T/TA 8.69E-9 119 40.67 52.22 7.15 KM Plot
THYM rs36030858 chr19:29319094 G/GT 0 117 46.23 38.33 9.32 KM Plot
THYM rs36053180 chr6:135140649 T/C 9.92E-5 115 37.63 49.85 23.7 KM Plot
THYM rs36067005 chr12:58343649 ATC/A 7.46E-13 118 42.25 27.3 6 KM Plot